Bio.IO.BAM.BAMFormatter.GetCIGARLength C# (CSharp) Method

BAMFormatter Class Documentation 显示文件 Open project: dotnetbio/bio

GetCIGARLength() private static method

private static GetCIGARLength ( string cigar ) : int
cigar string
return int 
        private static int GetCIGARLength(string cigar)
        {
            return cigar.Equals("*") ? 0 : cigar.ToCharArray().Count(ch => !char.IsDigit(ch));
        }
BAMFormatter
CompareByChromosomeName
CompressBAMFile
CreateBAMIndexFile
Format
GetAuxiliaryDataLength
GetBGZFStructure
GetBlockSize
GetCIGARLength
GetEOFBlock
GetEncodedCIGAR
GetEncodedCIGAROperation
GetEncodedSequence
GetHeaderWithSortedSQFields
GetOptioanField
GetOptionalFieldIntValueSize
GetOptionalFieldValueSize
GetQualityValue
GetRefSeqID
GetSQHeaders
GetSizeOfArrayType
IsSortedByChromosomeNames
SortSequenceRanges
UpdateArrayType
ValidateAlignment
ValidateAlignmentHeader
ValidateSQHeader
WriteAlignedSequence
WriteHeader
WriteSequenceAlignment
WriteUncompressed
WriteUncompressedSortedBAM