CanvasDiploidCaller.CanvasDiploidCaller.InitializePloidies C# (CSharp) Метод

        public void InitializePloidies()
        {
            Console.WriteLine("{0} Initialize ploidy models...", DateTime.Now);
            this.AllPloidies = new List<SegmentPloidy>();
            double diploidPredictedMAF = CanvasCommon.Utilities.EstimateDiploidMAF(2, this.MeanCoverage);
            for (int copyNumber = 0; copyNumber <= MaximumCopyNumber; copyNumber++)
            {
                for (int majorCount = copyNumber; majorCount * 2 >= copyNumber; majorCount--)
                {
                    SegmentPloidy ploidy = new SegmentPloidy();
                    ploidy.CopyNumber = copyNumber;
                    ploidy.MajorChromosomeCount = majorCount;
                    ploidy.ID = AllPloidies.Count;
                    AllPloidies.Add(ploidy);
                    if (copyNumber == 0)
                    {
                        ploidy.MinorAlleleFrequency = 0.01; // should reflect sequencing error rate
                        continue;
                    }
                    float VF = majorCount / (float)copyNumber;
                    ploidy.MinorAlleleFrequency = (VF < 0.5 ? VF : 1 - VF);
                    if (majorCount * 2 == copyNumber)
                    {
                        ploidy.MinorAlleleFrequency = CanvasCommon.Utilities.EstimateDiploidMAF(copyNumber, this.MeanCoverage);
                    }

                }
            }
            Console.WriteLine("{0} Ploidy models prepared.", DateTime.Now);
        }