CanvasTest.TestCanvasBin.TestBinSingleEndBam C# (CSharp) Method

        public void TestBinSingleEndBam()
        {
            string assemblyFolder = Isas.Shared.Utilities.GetAssemblyFolder(typeof(TestCanvasBin));
            string dataFolder = Path.Combine(assemblyFolder, "Data");
            string bedPath = Path.Combine(dataFolder, "bins_chrM.bed");
            string bamPath = Path.Combine(dataFolder, "single-end.bam");
            Dictionary<string, List<GenomicBin>> bins = CanvasCommon.Utilities.LoadBedFile(bedPath, gcIndex: 3);
            string chrom = "chrM";
            FragmentBinner.BinTask binTask = new FragmentBinner.BinTask(null, chrom, bamPath, bins[chrom]);
            bool exceptionCaught = false;
            try
            {
                binTask.DoIt();
            }
            catch (ApplicationException e)
            {
                if (e.Message.Contains("No paired alignments found"))
                    exceptionCaught = true;
            }
            Assert.IsTrue(exceptionCaught);
        }