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public Digest ( IEnumerable |
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| proteases | IEnumerable |
The proteases to digest with |
| maxMissedCleavages | int | The max number of missed cleavages generated, 0 means no missed cleavages |
| minLength | int | The minimum length (in amino acids) of the peptide |
| maxLength | int | The maximum length (in amino acids) of the peptide |
| initiatorMethonine | bool | |
| includeModifications | bool | |
| semiDigestion | bool | |
| return | IEnumerable |
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public virtual IEnumerable<Peptide> Digest(IEnumerable<IProtease> proteases, int maxMissedCleavages = 3, int minLength = 1, int maxLength = int.MaxValue, bool initiatorMethonine = true, bool includeModifications = false, bool semiDigestion = false)
{
return GetDigestionPoints(Sequence, proteases, maxMissedCleavages, minLength, maxLength, initiatorMethonine, semiDigestion).Select(points => new Peptide(this, points.Item1, points.Item2, includeModifications));
}
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Protein::Digest ( IProtease protease, int maxMissedCleavages = 3, int minLength = 1, int maxLength = int.MaxValue, bool initiatorMethonine = true, bool includeModifications = false, bool semiDigestion = false ) : IEnumerable |
public void DuplicatePeptidesAreEqualivant()
{
Protein prot = new Protein("DEREKDEREK");
var peptides = prot.Digest(Protease.GetProtease("LysC"), 0).ToList();
Assert.AreEqual(peptides[0], peptides[1]);
}
