| public static IsDuplicateFailedQCLowQuality ( BamAlignment alignment, uint qualityThreshold ) : bool | ||
| alignment | BamAlignment | |
| qualityThreshold | uint | |
| return | bool | |
public static bool IsDuplicateFailedQCLowQuality(BamAlignment alignment, uint qualityThreshold)
{
if (alignment.IsDuplicate()) { return true; }
if (alignment.IsFailedQC()) { return true; }
if (alignment.MapQuality == FragmentBinnerConstants.MappingQualityNotAvailable
|| alignment.MapQuality < qualityThreshold)
{
return true;
}
return false;
}