|
static private ExcludeTagsOverlappingFilterFile ( string filterFile, BitArray>.IDictionary |
||
| filterFile | string | Name of bed file to use for filtering. |
| tags | BitArray>.IDictionary | BitArrays of possible alignment positions. |
| return | void | |
static void ExcludeTagsOverlappingFilterFile(string filterFile, IDictionary<string, BitArray> tags)
{
using (StreamReader reader = new StreamReader(filterFile))
{
string row;
while ((row = reader.ReadLine()) != null)
{
string[] fields = row.Split('\t');
string chr = fields[0];
int start = Convert.ToInt32(fields[1]);
int stop = Convert.ToInt32(fields[2]);
if (!tags.ContainsKey(chr))
continue;
for (int i = start; i < stop; i++)
tags[chr][i] = false;
}
}
}